![]() ![]() You may need to install OpenSlide separately through your package manager.īlack/white tiles can appear in some images reading using OpenSlide updating libpixman can resolve this (see Issue #355), or alternatively you can try the alternative bash script /path/to/QuPath/bin/QuPath.sh to launch the software. QuPath for Linux was compiled on Ubuntu, with best efforts made to include all dependencies, although in the case of OpenSlide this wasn’t entirely successful. But it doesn’t work on Apple Silicon even if you use the Intel build (this will hopefully be fixed by the TensorFlow Java maintainers in the future). Images opened with Bio-Format may not work if they require a native library, e.g. You can add it separately with the help of Homebrew - see for details However, there are a few significant isadvantages: If you have a new Mac with an M1/M2 processor, this is likely to run much faster than the alternative Intel build. V0.4.0 introduces a new (experimental) QuPath build specifically for Apple Silicon. However, as an open source project, we don’t currently have the time and resources needed to distribute QuPath as a signed/notarized app and avoid these warnings. Since macOS (presumably) has your best interests at heart, circumventing its security settings routinely is probably not advisable. ![]() ![]() zip file instead, which should not need such privileges. If the QuPath installer does not start at all, you may not have administrator privileges on your computer - and therefore cannot install it. Windows warning run anyway The QuPath installer does not start If you would like to get past this screen, press ‘More info’ and the option to ‘Run anyway’ appears. It is expected that Windows will give a scary-looking warning whenever the QuPath installer is first run, as it tries to protect you from software it does not know. Windows (.msi) The QuPath installer gives a scary warning It is important to first extract the files into their own ‘QuPath’ folder, and then run QuPath.exe from within that. If QuPath does not start, make sure that you are not trying to run it directly from within the. If you have trouble installing at all, please see below… Windows (.zip) This is useful when using the Command line. The only difference between these is that the console version also shows a console that prints text as QuPath runs. On Windows, you will see two executable files: QuPath.exe and QuPath (console).exe – perhaps with version numbers incorporated. ![]()
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